Scaffold Ga0074046_10000047

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000047
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99729
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (67.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001289	Metagenome / Metatranscriptome	730	Y
F001567	Metagenome / Metatranscriptome	670	Y
F002181	Metagenome / Metatranscriptome	586	Y
F005245	Metagenome / Metatranscriptome	407	Y
F022395	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_100000473	F022395	AGGA	MKVRSAKFILLVIAAYVGSGVALWAQAPPSQTDSANTNWTSTTDSRNGDADPIRTVESHSQSGNRNLDKQSVERRSDDGGFVPYQDIEKETVQVDADTVRTTTRTFTRDPDGAKQLVEVVEEERHTAGADSTVVRSTSDPDVNGNLQVIRRQTEQTTRTSPNVEEIKTMVQLPDVNGGLTAAVKVEERREQGANGAVESQKTTLLPDGAGNWQVGEIRRTTIAQEGDHRTTDEQVFLPDSEGKITEASRTITNATESGSGEKRNTVETYSIAIPGAVADGRLHLVERDITAQQTSATGQQVTQQQVQQANPGDPGSGLQVVTVTIDAVRPGASGAQATRTIQARDANGSFPVISVDTTKSDNIHAIQVQIAPSEAPKKDAK*
Ga0074046_1000004735	F002181	AGGAG	MADILKKDPELSSRLRKTNEELKNLQSSVKTGMINVKVLMDFRSATERARQASAAVQQWLDAQGKGGDPYKLMEQVVRQRVEMATQLIRDVTVDLESLDVDYDTPGLPELNQAVRKLAERLEKLFPR*
Ga0074046_1000004750	F005245	N/A	MLGGSLLAHSAQHSQKWESGSFDITITIELQQMHAKDLSTAVERLASVIGPKLALDRASFHINVKPAADKLDLQPSLCFPERVAA*
Ga0074046_1000004751	F001567	N/A	MERSLIWVEGDAKGWACSSCQWKFPVPTLLSGEEAKGAYDRLAAGKFREHKCWSGTSFPAGEQQTTLDAHTTFAERARMLVKRGNTPKVAVELVLHEMEFEHRNNSRMMEKARADAEDFLLKARKGLI*
Ga0074046_1000004779	F001289	GAGG	MKNPYEVLRIKEQELLRVRKEMEALRISARLLGAEDPGAAKAENQPKLPRVVEMP*