Scaffold Ga0074046_10000037

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000037
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111361
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (53.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000372	Metagenome / Metatranscriptome	1220	Y
F000633	Metagenome / Metatranscriptome	971	Y
F036863	Metagenome / Metatranscriptome	169	Y
F038358	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000003712	F000372	GAGG	VTSSESSSQSPSNVARRWTVIASGLLLLALALVVIYTGPAAFLSPVALVTVAAIGLAALLLQVRFRRELPSIHPPLWLNVLGILCAMISLFADNLRMTRRALDMVAFAAVLCFGISGSLILRALRRVRAPRPAQSE*
Ga0074046_1000003738	F000633	GAG	MFFVNFVPEEGRWYCYAPTATGMQKIPVAMDGAPFEASYTVALDEQAKEIVN*
Ga0074046_1000003762	F036863	N/A	MFKKSIAAALLMVMAAWAEMVLAPMLFMHSGHVHAREMAEPASGQTAAHHHHAMPAGHPCCPGIGKTESTALSEVAASTEPCQNEHRCCFQQGPQNVPAPVNARVSREIAPAVIAEISPDHDAESHLSPRIVLAPGPPPARFGMVLRV*
Ga0074046_1000003763	F038358	AGGAG	MKFRMIALTLTLALSLMGWAQQTPAAPNSTPAPQAKSCCHHNMADMKDGKSCCHHATADAKDATACCGKDNDQCQMKDGKSCCNGKDMKAAMKECKKNGCCAEGKGCGEAKGDKTAMGCCGNQCDRHPQTPAGS*