Scaffold Ga0074046_10000003

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000003
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 242991
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (55.98%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004980	Metagenome / Metatranscriptome	416	Y
F006434	Metagenome / Metatranscriptome	373	Y
F063977	Metagenome / Metatranscriptome	129	Y
F067033	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_10000003138	F067033	GGAG	MIGGSHLLLATPSGPVDASLGRFGLRGYGAVSVAAGQQIEATGVMKTIKDKQVLLVRIVKAGGEVYTIRNQHGVLLSPRARERAAQKASQKGESL*
Ga0074046_1000000315	F006434	AGAAG	MRRLAFSAVVVALALALNLVCAWAAAKEETVEELKARVESARPEDRADLCMRIAQHQLQNADQLYIDGKVDQARAAVDDIVSYSEKARDAARQSRKRLKNVEINVRKMAEKLRDIKRTLAFDDQPPVEAAIRRLEDVRTTLLKEMFAKDVKEEKK*
Ga0074046_10000003166	F004980	N/A	MKLVFGFAVLAFAGLVCFKLIPPFFANYELEDAIKTEATQSTYSTRSEEDIRQSVIKVARNYDIALTPKQVHVQRVGSLGTGTLSIDAEYSVPVDLPGYSTILEFHPSTQNKGVY*
Ga0074046_10000003209	F063977	N/A	MSTDAIRWDEKAGLRTGCGVRSQVIDVLKAQIKRRPAMKKVS