NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074046_10000002

Scaffold Ga0074046_10000002


Overview

Basic Information
Taxon OID3300010339 Open in IMG/M
Scaffold IDGa0074046_10000002 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)249239
Total Scaffold Genes231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)151 (65.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000419Metagenome / Metatranscriptome1160Y
F000477Metagenome / Metatranscriptome1097Y
F001063Metagenome / Metatranscriptome789Y
F005058Metagenome / Metatranscriptome413Y
F005085Metagenome / Metatranscriptome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0074046_10000002150F001063AGGAGGMETMLQGLVIIGGLTFSLATSLLIEELIFGQIVRVAFARRPENPNRAKELKGARP*
Ga0074046_1000000216F005085GAGGMEKQFDSEPAENVTREELTSVMTALEPDQIIFAKEHHHCPRRELTRTEMILFWALRIYLVFMVGVVVYQIWTGAR*
Ga0074046_10000002209F000477AGGMVVTGRCEPLPDTTTKKFTPEIDAQLYDEFVAVAERNGQTKRHVLEEALRFYLHNVVPSQHLVRPEVMDAFEQSVARNRDLLQRLAK*
Ga0074046_10000002221F000419GGAGMATKFPQTHDGGEDSLRFQPMERLKVYFFGITVLFAALGMGEAVYRVLFSEFDGATDRLPIEAFFGLVFAWLAIRFVGNVYRNRKQRRDRLNFIWARNHQIRGAVEGITPLAHPVKNQQSIRLIREEVDRIEWALKEILPQ*
Ga0074046_100000029F005058GAGMTLTLALLVVAAPSFAKTHNEMYPVACSVLWPAVKDALRNSGKYGIVGIDNTEMTASFVIGGFLGGKRINSVVLNAKGDTCEMQVQTAFSGLAHNDEGDFKKRVDESLATQQSSQPAPPPKPAGETK*
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