Scaffold Ga0074046_10000001

Overview

Basic Information

• Taxon OID: 3300010339
• Scaffold ID: Ga0074046_10000001
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 256610
• Total Scaffold Genes: 245
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (64.90%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006229	Metagenome / Metatranscriptome	378	Y
F015120	Metagenome / Metatranscriptome	257	Y
F017859	Metagenome / Metatranscriptome	238	Y
F024591	Metagenome	205	Y
F044182	Metagenome / Metatranscriptome	155	Y
F059669	Metagenome	133	Y
F099608	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074046_1000000115	F099608	AGGAGG	MKKMLLALGVLAMGASFSPAGQKPMMGTIISESSVDCGTKKQGKKESTELLCQQYTVRTDTSEYQIRQEKPGEKAIIPANTPIEFTLDKDKMKFKANGKKYEFLVVGNSAIGAGTK*
Ga0074046_10000001202	F024591	N/A	MSRRSRFLLVAMSAAFGIAALGLVLGMCYILYLVAFHHGQLENVLGDSIPYNKTLGGLGILGMVLFFAFLFSAIADKKQDKPR*
Ga0074046_10000001214	F017859	GGA	MDTSAAELALQELQERIEASGLEATYAGLVCDLCVEQVSLEKAFGEVHQKAIEHMVGLLDAKILEDELALQACLDKIAQESERLAWSALERGTEALREGIAILEGTAFMPDGGYVN*
Ga0074046_1000000124	F044182	AGGAG	MPQTGSQVLFLGELPFWLKISQSVVEAPAASFQIHRSPSLRDALRRLDSEKWHAVLLDFSHPSAQELLAARKLHDGLGSVPVVALLPIADVQYENAAVLAGAASSLLLDEVSAASLHQAIANAINTTAVRKNSRKDTSMQFPLGQPGVDSLPLAKLDAISHAINNLLCVINANADILTDQLDASHNAIRSVSQIKKATKSAADLMRLLKTP*
Ga0074046_1000000171	F059669	GGAG	MNTCRTQPPWEFLLTASRNTLQSYELSRLGHASNLRKEIASLLDQWLDENANAMVARWLIEQRERTVRASDPEPAPEPSTPEATAPSNGHSVSDNFLADRLVRPQVSRRRD*
Ga0074046_1000000174	F000188	GGAGG	MSVKPEMAFDVCWEVYRGAREVMESKRGIAALNMEMETKYEWRPDVRPKMKDWVADFALAGQAALAGPEWASRMVLFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRRRCGAEILRRGMFPPRKYFGGE*
Ga0074046_1000000183	F015120	GAG	MFEILKRAFQTRYVGMLEGEVLRLRMENRALMNSLLGTAGFPPVEFVEAVKRVELPRMRRRSWQQIQRKNETEAMRETRDEFVEAVR*
Ga0074046_1000000188	F000739	GAGG	MVAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGGAAALINAVIGVAAYLQKSPLPGE*
Ga0074046_1000000192	F006229	N/A	MVGGPEASVKRKLSFRTPQEDFRLKIERVRMNKQSDVVSLVNISAQKWPPRNRTYFGSLTIASPEAGAVYAVTPVRGCSSVMDLGDRRTMEIRLTAQEIAEDLVREINGDSGEGSYHGVFVAAGLEPTEEELAAARKKLEAFQRRLVEAADLEWERSHNLMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIKPGVAVCRTCGAILDREKAAKFGLAEREEGRGVETPTRVEKVLERGKRK*