Scaffold Ga0116245_10119458

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116245_10119458

Scaffold Ga0116245_10119458

Overview

Basic Information
Taxon OID	3300010338 Open in IMG/M
Scaffold ID	Ga0116245_10119458 Open in IMG/M
Source Dataset Name	AD_JPMRca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1529
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	36.29	Long. (^o)	139.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103108	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116245_101194582	F103108	AGGA	MKKTELIIPFTKKLAEAAGLAKETEKGERFFRCLRMPGYFPPKGDLESFAERLCKLLLEKHEEALLYTENGLRRVLEDFSAAEEILEKLSSSWEEDAPDAYAVVSRSDDEWTVLFGYEDGVEAVLCEKGRTVRIGADEPER*

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