Scaffold Ga0134071_10050444

Overview

Basic Information

• Taxon OID: 3300010336
• Scaffold ID: Ga0134071_10050444
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1886
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074156	Metagenome	120	Y
F088654	Metagenome / Metatranscriptome	109	N
F099071	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134071_100504441	F099071	AGGGGG	MIATLLVTVLASTAVLSDTMVRLGIVERDLTGDNVPEILSLTGRGQTVDSLEVTFTITSSGRTVFETKWSETRAVGFDAGRRVLSAAEHRRRLRELGRFFFADEKFMSPAEFLISLRGSAPRHIDLIPDVIARDLHRSDRSWAQLIWDEMQAAGITLFEFSVGGDAVTTIGWSASDKRFYHLLECC*
Ga0134071_100504442	F074156	AGCAG	MTPPSRSRARQLLDLAIPFVGVGAGAVTVVLFHNPRALIPRPPYWPWLFMVGALGAFAGTLALGLEDGWADDDDVDPAERWRAAVLAYVAGVVASVTFVVMVALLDRLD*
Ga0134071_100504443	F088654	AGG	MGQAQSTWDRYKPGTISGVIQENDSTIRANSVGRLPSWVVTGNQFPTLTRVVYRGDWRPVDSIRAEIVRRWGVSFLRDSSMARRFRREYLFQEGQTLLWLPVQDTVASYFPRELQTGQEIALYVLWLGAYYAGHDITWAFVVTEFDAGPAKR*