Scaffold Ga0134071_10017912

Overview

Basic Information

• Taxon OID: 3300010336
• Scaffold ID: Ga0134071_10017912
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2958
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y
F052533	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134071_100179122	F006201	AGGAGG	MNPIQKTLLTTAFEALGPERVTRGLKATGHNWRDCFLAVATYGQPDALARKLENRWRKEHYVSTLLGVRVQAVNEVVRAWDHDEGEFRCLAAEWLELNHAPRPSNWSASDRDDSAVAVE*
Ga0134071_100179123	F004205	GGAGG	MEARVTVQSQSFRLRERMEEANISHGQEIRADLPNIRVLALAGSGEGQALFCAMGPIRVREILNRGDDRPLPTDVTLEGLEVFSSGTYDVLNALVSSNGNLRLVVDGQTRVVHAASVVGAGQASAEL*
Ga0134071_100179124	F052533	GGGGG	MSEVRTRAEVHEWILTQVRQRPGCQGFSQQFRLLGNGPNWQCIPTNCYDWDRASLEAFDQVVGDARRRFELQG*