Scaffold Ga0134071_10004988

Overview

Basic Information

• Taxon OID: 3300010336
• Scaffold ID: Ga0134071_10004988
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5050
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006513	Metagenome	371	Y
F018583	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134071_100049887	F006513	GAG	MRSLTWVSDKHLTGWACSACDWTFPLPSLLSDPEAKKAYDRLASAKFQRHDCATHQPVASLNPESFIARAKGLVMRGIKPKDAAEITAKEIMFENHDDPDIARKVQIEVNDFLRRVKEGLI*
Ga0134071_100049888	F018583	GGAG	MHILELLRAERDKVAQQVNALDTAIRALSGSSNTRVSHGPRKMSAAARARISA