Scaffold Ga0136644_10091491

Overview

Basic Information

• Taxon OID: 3300010334
• Scaffold ID: Ga0136644_10091491
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1902
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F008812	Metagenome / Metatranscriptome	327	Y
F057320	Metagenome / Metatranscriptome	136	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136644_100914911	F008812	GAGG	MIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYEATTQPYQDQGTTAVAGSYGTQGTPPHRYGQSPQANTNPIR*
Ga0136644_100914914	F086678	GGA	MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEHIYLDERGYKDYTNADGLTCVLHTTHILKDAGWTLE*
Ga0136644_100914915	F057320	N/A	LKGIKMSYVGLYDDEGSKNAFYIIKDKKINRKRVGFKEFENEQEAKFAHRVQSHLAQFDLAPMVYGDVGMIRRYDGELTCYGYLTEVARPMPECHDDENCDGECFQTDCKNGCAINNVVDSLGENGLVYSDAHKGNFGYVRRKGSWIAVAIDLGIESFSEWDEDIYGQFDYNDVCDDNYLCSCVHCQKFRDRG*
Ga0136644_100914916	F008236	N/A	YTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKAKAKAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*