NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136644_10080175

Scaffold Ga0136644_10080175


Overview

Basic Information
Taxon OID3300010334 Open in IMG/M
Scaffold IDGa0136644_10080175 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2053
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008236Metagenome / Metatranscriptome336Y
F008812Metagenome / Metatranscriptome327Y
F057320Metagenome / Metatranscriptome136Y
F086678Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0136644_100801752F008812GAGGMIQWVGILIAVLGLAYNGVKDYQKGDLKLSRLPQKQVLTKPVYPVQYCLMAYDPNVDKVFYLHENGQWYDYAPQQRRYEAQAQPYQNQGSPAMAGSYGTQGTPTYRYGQSPQASTNPIR*
Ga0136644_100801754F086678GAGGMKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEFIYLDERGYKNYTNADGLTCVLHTSHILKDAGWSIE*
Ga0136644_100801755F057320N/ALKGIGMSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENKQEAEFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGELTCYGYLTEVARPMSECHDEDCDGECFQSECKNGTYIDEVVYDLREHGLDYNDAHKGNFGYVRRKGSWVPVVIDLGVESFTEWDESIYGQFDYDENEYDDDYNGCNCTKCQRLREEE*
Ga0136644_100801756F008236N/ADTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALSQGFKLFAWCDSDMKVAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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