Basic Information | |
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Taxon OID | 3300010334 Open in IMG/M |
Scaffold ID | Ga0136644_10059425 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2443 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010746 | Metagenome / Metatranscriptome | 299 | Y |
F016115 | Metagenome / Metatranscriptome | 249 | Y |
F020860 | Metagenome / Metatranscriptome | 221 | N |
Protein ID | Family | RBS | Sequence |
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Ga0136644_100594253 | F020860 | N/A | MEITKAKKLKEGGYALYGTDSKTKQEIQVGYIGENLNLEAWLPKGVKIENS* |
Ga0136644_100594254 | F016115 | AGGAG | LKILEETFTSRGFKFTMLGRDGDVAIYKKQLDEPDSEAFNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCIDREDADKRFVQLKEKLSAYVATATMPNGEKRGRGRPRKIELTPEQVAV* |
Ga0136644_100594255 | F010746 | N/A | MTYKCAVSGEALSPERVEALQVLGVPETLWTKKEYSQTRKLKAVYAGDDGSNDIVICDAVDGGSMFDNIVVAEVENE* |
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