NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136644_10047888

Scaffold Ga0136644_10047888


Overview

Basic Information
Taxon OID3300010334 Open in IMG/M
Scaffold IDGa0136644_10047888 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2766
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y
F062447Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0136644_100478881F062447AGGAGMKHKIFWEKNNRVKGIVPQEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQYTNWGGNYTMAETKLMVTFDKNNQGYSFNGAVKSFSLQDLKEVLKSVRETINKL*
Ga0136644_100478882F032536N/AMSQKQTFEELMRSFRFHKNPILNWVLGNNNYLYHTFLNTKWKVKNVLQKLTRGFSDSDCWNLPQSTAKFLLPRMKHLRQNYHSLANRHHLLIDGKIVPYVGKEDNYEFDEKLGCYTDKTTGLGLSLDEKEYEYILDEIIFALQMIVDEDDINFSLEEIYEVYPKGFDPIKDRQMFLTKQDSGDYLVEFEQKENIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD*
Ga0136644_100478885F048123GGAGMKPRYDFNKGKLISYDGEIIEFASSALADKYSDQVEEIMRLLNLKKGQYLITDESTIGDFGKETINKVLLEKFKKKYGFSLTNNSNISKIAERMYNFRPF*
Ga0136644_100478886F034827N/AMKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL*
Ga0136644_100478887F030670N/AMKVIRYIKELEDEFGKPLDKWAVYEEIHKPNYPHAKFIDAKIVKTFVSPYHARNWMENDGKRTN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.