Scaffold Ga0136644

Basic Information
Taxon OID	3300010334 Open in IMG/M
Scaffold ID	Ga0136644_10016789 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010334 Open in IMG/M

Scaffold ID

Ga0136644_10016789 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4996
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4996

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Taxonomy

All Organisms → Viruses

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F020513	Metagenome	223	Y
F027490	Metagenome / Metatranscriptome	194	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0136644_100167891	F020513	AGGA	MLDKQNVIVEGIESPSGNKDLINKVAHEIYVKMVDYLRLTQAKNTYNRFSDYHYLNIPISNSTEPIRGIDYIHPVVAPGIDYATAIITKCLMPNGKVNFEFERFTEMDSDQSNQATEMTKYMINSKNDSYQVIRDWAQDACLHKNGIVMVSPNRRPITQYKQVEGTRDQLRSFEIMAGEKGLTTKRQNMRKIDVDLQGVMQEAMAQGPEATDIGDTLNANVIYRAEYKLTGYETEVKIKHVAQHYFVCNPTISTIQDQDFCGFYDPMTIHEAKEQFPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWLRRDIDGDGQEELIECCFSGSYVIYAKEVEFIPLANMCPKPIVGNFFGYSLAERLVPMQEYATAIARAEMAFAMQSSTPRIGVNPEFVDAEEIQRGVSAMFILDRKFDPVKHVYEFEAMQGNLAYVQSAMQRFDADKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDMIYLVWKTLIQYEDDYNIQQLA
Ga0136644_100167895	F001059	AGGAG	MATYDIEALKADLPTAKDLAQFVYDRTQISLDLIGKSKEDQYIVAKNALEGKKIPSEYITDENPYVDKRETIPVDEKRKLPPRSADLPPEENRVNFFGAFNMPHPQDPQGDKKVQINFWKYDNELITYQIMGPIEQIAVGEKINKYGQSVPEKYSWIDPRTEEKVLRRPDGTYTQEGRGLYLFCSGEKGSGIWRMIDKDIGTTSAKNITDPWA*
Ga0136644_100167898	F027490	GAGG	MSGYGQVLSGGASMRKGVSKDINDKHKSRESEIARRDTVAKAVNNAYTVNTVSSQHTNNVGKGGKFTKPSVPSKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136644_10016789

Overview

Ecosystem & Geography

Associated Families

Sequences