Scaffold Ga0136644_10001541

Overview

Basic Information

• Taxon OID: 3300010334
• Scaffold ID: Ga0136644_10001541
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18230
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003112	Metagenome / Metatranscriptome	506	N
F039992	Metagenome / Metatranscriptome	162	N
F091592	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136644_100015411	F003112	N/A	TNFSLRFLMTQKEYECFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEDGRDRDEIVDAVVHLAVALKYLEGRGRES*
Ga0136644_100015412	F039992	GGAGG	VSLDEVYDLKDRVASVSERLARMEERQITLISMLERSLSNFGDLSNRVNAIEGLKTKMLLVAGGLGAIISIAWDFVKSKLINGG*
Ga0136644_1000154125	F091592	GGA	MISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDAKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGIGNVN*