NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134080_10623709

Scaffold Ga0134080_10623709


Overview

Basic Information
Taxon OID3300010333 Open in IMG/M
Scaffold IDGa0134080_10623709 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005864Metagenome / Metatranscriptome388Y
F020614Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0134080_106237091F005864N/AMLEKIEAKLVPPERKWLRAIIHQGDAEAVVEEKQEKALAEHVTRHPEDAGRTVEDFKWILRIIVRPTA*
Ga0134080_106237092F020614AGGVTKGLAKTIRAMAEGSLDSQVGARICNGLGIMRACLETQKLEQLEARMDEIADRVARDRTNAARERTSTHEAQRSSH*

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