Scaffold Ga0116200_10073497

Overview

Basic Information

• Taxon OID: 3300010332
• Scaffold ID: Ga0116200_10073497
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1768
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F019588	Metagenome	228	N
F040421	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_100734973	F014691	AGGAGG	MSKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQTNTSLANTSSIIPTLTSFLPYIALVVILAMAIGVFLSLVRVR*
Ga0116200_100734974	F040421	N/A	MREESVRAITMLTLAFTIGFKSIILFLQHSFGFALTLFLLAWTCICFAFPDNLIGVSIGQDLKLEEVIEKWVRRRELKRK*
Ga0116200_100734975	F019588	GAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGIPVKDLLK*