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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010332 Open in IMG/M |
| Scaffold ID | Ga0116200_10008367 Open in IMG/M |
| Source Dataset Name | Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4866 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016098 | Metagenome | 249 | Y |
| F016235 | Metagenome | 248 | Y |
| F024940 | Metagenome | 203 | Y |
| F024941 | Metagenome | 203 | N |
| F040961 | Metagenome | 160 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116200_100083672 | F024941 | AGGAGG | MAYYFWGRLGLTKGEEYRKLLERAWNLGWSQRQFFREARTRGLGYAEKLMREDWHRFGYVESARTYEGKLTQHIFFDEVVRKLHDKEGWSWKEIKEFLNERKDPRKWTPETKVKEKIYKSYLKEALPEKADT* |
| Ga0116200_100083673 | F016235 | AGGGGG | MSKVKISSSPPLFSHKKGRHRHGYQGCVAFVGIDKNNDYFGEGFPLCAVVKFKRPIYRYTPRSYELARLLATLKILYGEEYMEELLAWTELEYKRMRRGREWLIIFGDGSD* |
| Ga0116200_100083674 | F040961 | AGGCGG | MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFGFTDADIAKCEELAWLYVEF* |
| Ga0116200_100083675 | F024940 | GGAGG | MEREIIYKKIRSIKQLREFITDYLIEHSEMRTKAMLTQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEEQKREEDENRDTF* |
| Ga0116200_100083676 | F016098 | AGGAGG | MSEERKFVYMRKTRSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRKIPNEDNKRNLIYTWCDKCGGLRFFRKISEDRWRCEMCGTERTATELIEKVRSILEVD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |