Scaffold Ga0116200_10001947

Overview

Basic Information

• Taxon OID: 3300010332
• Scaffold ID: Ga0116200_10001947
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8362
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_100019471	F028993	AGG	VEMADIVEKAVKKRKERIAVSEAYYREGVEAPSKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTDGWKRATLAKADRWLTGATSTEAEENYASAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKRGR*
Ga0116200_100019473	F011723	AGGGGG	MVIYNKGLSRDNSTDEGKTIFTLTSKEEEKYKVRRIVITDVNSNPLIMEVWVERDRIGENIPLEVASDLAPERVIDIDMEIPVGYTFSIKIKPQSSGNQGSVRGWVEYEIVG*
Ga0116200_100019474	F009582	GAG	MVRKRGRREFVGGTGRAIKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGVLKVGISGAGFEDIDVLKGTATIEWSDVLEFDFVPNRIRFESLDYPYVAKFSKDNVTWSEEIYVDEGMPRDYDICARYIKVRRYGGTDAKYWIVGMR*