Scaffold Ga0116200_10001003

Overview

Basic Information

• Taxon OID: 3300010332
• Scaffold ID: Ga0116200_10001003
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10536
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_1000100315	F009582	GAG	MVRRRRRREFIGGTGRAVKEARVDVVLQRVNEKIGSELDVSPSHIFRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGLVKVGIAGAGFEEIDVLKGTATVEWSDVLEFNFVPNRIRFEGLDYPYVAKFSKDNVTWSEEIYIDEGTPRDYDICAKYIKVKRYGGTDARYWIVGMR*
Ga0116200_1000100316	F011723	AGGAGG	MVIYNKGLSRDNSTNEGKEIFSLTSKEEEKYKVRRIVITDVVANPLIMEIWLERDRIGENIPLEVASDIAPERVIDLDVDIPVGYTFSVKIKPQTSGNQGSVRGWVEYEIVG*
Ga0116200_100010032	F024941	AGGAGG	MAYAFWGRLGLTRGEQYRQLLERAWNLGWSQRRFFREARARHLGYAEALMREDWHRFGYVESARTYSGKLTQHIFFDEVVKKLHDEKKWSWKEIKEFLNERKDPRKWTPETKVKERIYKSYLKEALPEKADT*
Ga0116200_100010034	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEMRSKAMLAGNTFVIAYEQGFLDALKTVRDLLSKEGLLMYRYVINGEEERAEDKNRDTF*
Ga0116200_100010036	F016098	GGAGG	MSEERRYVYMRKTRSGNGVRMRDGEIVYIASIRSLEQFLQGEQEYVAFARIPYRQIPNENNERNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTARELIEKVRAILEAD*