Scaffold Ga0116200_10000979

Overview

Basic Information

• Taxon OID: 3300010332
• Scaffold ID: Ga0116200_10000979
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10624
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_1000097913	F016098	AGGCGG	MSEERKFVYMRKTRSGNGVRMRDGEIVYIASIRSLEAFLQGEQEYVAFAKMPYRQIPNEKNERDLVYTWCDKCQGLRFFRKITEDKWRCEMCGTERTATELIEKVRSMLETD*
Ga0116200_1000097915	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEMRTKAMLSQNKFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKKEREEDENRDTF*
Ga0116200_1000097917	F024941	AGGAGG	MAYYFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARTRGLGYAEALMREDWHRFGYVESARSYEGKLRVHIFFDEVVKKLREEEKWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYARKAFPELYL*
Ga0116200_100009792	F028993	AGGTGG	MADIVEKAVKKRKERIAVSEAYYKEGVEAPSKDWLTEFKKAKDRRNAGLRRAMEEGLFEVGAERVGTEGWKHATLAKADRWLTGASSEEASAKYESAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMSKCMEEKRKRR*
Ga0116200_100009794	F011723	AGGAGG	MVIYNKGLRTDSSTDEGKEIFSLTSKEEEKYRVRRIVITDVYTNPLFMEIWVERDRIGENIPLEVASDIAPERVIDIDTEIPIGHTFSIKIKPQNSGSQGSVRGWVEYEIVG*
Ga0116200_100009795	F009582	AGGAGG	MLARRGRREFIGGTERAVKEARVDVILQRVNEKIGREIDVSPSHIYRYGVNNIFQRTFAYLLGWKADGEPQKVAVTEGGLLKVGIAGAGFEEIDVLQGTATVEWSDVLEFSFVPNRIRFESLDYPYTAKFSKDNVTWSEAIYVDEGTPRDYDICAKYIKVKRYGGTDAKYWVIGMR*
Ga0116200_100009798	F091133	GAG	MGIFDVWTSWTDWLSDWWNAFKDKVWDIKVELWSWVDDIAKYWVEQADMFFDILKHTWSEVEDLMEQAKSYADDIVTDAILKIDNWVTTFGETVAELWEKIEPYFEPIITPIEEALDTIQNVKIPSLEEITNWAKEQLDNILNTDLPFLNQSVNDLWNEANEIWNEIWNSIWTSLNNAWDDINNLWNTFAEIPADVWNAITEGWEGFTDFLFEQGEKFVEKVLDIDLPVDDIIEDLERKFKGGEK*