Scaffold Ga0116200_10000886

Overview

Basic Information

• Taxon OID: 3300010332
• Scaffold ID: Ga0116200_10000886
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10963
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y
F055335	Metagenome	138	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_100008861	F024453	N/A	AILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVGERVKSVREERREGDMDKVRSVHELAQVRKANAKQ*
Ga0116200_1000088610	F040421	GGTGG	MREERVRAITMLTLAFVIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDNLIGVSIGQDLKLGEVIEKWVRRRELKRK*
Ga0116200_1000088611	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGVPVKDLLK*
Ga0116200_1000088615	F072934	AGGGGG	MVEIDIEKLLADEEIREKMNEWVREKAKRRLESMKNLSEPHRRYLEKIASGEWEVW*
Ga0116200_100008862	F015290	GAGG	MLNNKGQAGEIAVFVILAFMIAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0116200_100008863	F007460	AGGTGG	MSDEGGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETSPFAQALTVMPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGGEEWW*
Ga0116200_100008865	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTSVLRVPSEIALLLQGVVYVVFAWAIIQFLSGRSVKYME*
Ga0116200_100008866	F017081	GGAG	MWKRKWWKGICIFIVLAFLITTAQAIDITHVTITSPTTIRIVIENANSSGYIFISPTNTSFPYAFSHQGNGTYTITTTFLKPAIWYFKACDNSGCSNVISVDVSAKEQLMEQNFTSQFNTLMQSGNFLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGRVLIVMLSPSAQHIAYILLVISIAGTLYTIIKARR*
Ga0116200_100008869	F014691	AGGA	MERRGWWIVRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVGAR*