Scaffold Ga0136651_10012669

Overview

Basic Information

• Taxon OID: 3300010330
• Scaffold ID: Ga0136651_10012669
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4628
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050821	Metagenome	144	N
F057027	Metagenome	136	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136651_1001266910	F057027	AGGAGG	MARKWDRGVFEEARREVEERAKKIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMQGSVFTITGMGNYNYEVVYRKPAKEPQIVDERKIEDVVKKVISSGNIPKENISLWVKEYLKVEGLEVPAAVIESVVNRVVG*
Ga0136651_1001266911	F050821	N/A	MSFKKKENTKFGRFNMIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRSGDFAYVTSALAPDILRLDEMKELLEGKRIRIPLFKIKDKFLPKYY*
Ga0136651_100126692	F100149	N/A	MYWSKEEEEILKSLWKKPDITAKTIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIII*
Ga0136651_100126695	F098395	N/A	MKIEVITPLDLEDFVKRIESLEEDSKLHDSLLHDAFENIDQMKKRLNELEKRVKCLESNEEAYSKE*