Scaffold Ga0136651_10000464

Overview

Basic Information

• Taxon OID: 3300010330
• Scaffold ID: Ga0136651_10000464
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22269
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F040421	Metagenome	161	Y
F042112	Metagenome	158	N
F055335	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136651_1000046412	F019588	GGAGG	MGEEERIEEEVKRVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVRDLLK*
Ga0136651_1000046413	F040421	GAGG	MREEGVRAIMMLTLAFVVGFKSIILFLQHSFRGAFTLFLLAWTCICLAFPDNLIGASIGQDLKLGEVIEKWAKKRELRRK*
Ga0136651_1000046417	F017081	AGG	MERKEVRWWKGICILGMFAFLIASTQAIDITEITVTETQIKITITNATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNSTYYVKVCDSESCSNVVSVNVSKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLTYWIRQEDVMLPSIVGLITGSVLIVMLPPSAQHIAYILLVVSIAGTLYTIIKARR*
Ga0136651_1000046419	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTTVLGVPLEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
Ga0136651_1000046426	F042112	AGGA	MNFNDYSPTPLPSEEEKYISKLAYPHLLFIQIQRIMDAINVGDDGKEELENLKALLKPSWREEIDAKMEKHEKEMEREISKIAKVKERVGITTYKEMKRRAIVKYVRRYVQYVIEKLDEVGLLLVEERTVLRGGGIIT*
Ga0136651_100004643	F019935	N/A	MPKVKETPNRVIVHIGDLWKKYHRASPKVRKRWKFRIKDVGRTKHSELILCNPPNKDWQVYGWSFSKSQVRKGKRKLIVSDVKAIEILQKLKENGELRGWKLVFRS*
Ga0136651_1000046431	F023017	AGGAG	MKQKIVEFLKNVNGHIATIPILAKVIKASPPTAKSIVGELEVEKKVRIVRLGNDYIVKLEKGGE*