Scaffold Ga0116246_10198853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116246_10198853

Scaffold Ga0116246_10198853

Overview

Basic Information
Taxon OID	3300010327 Open in IMG/M
Scaffold ID	Ga0116246_10198853 Open in IMG/M
Source Dataset Name	AD_CNMVca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	845
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Canada
Coordinates	Lat. (^o)	49.25	Long. (^o)	-123.1	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097174	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116246_101988531	F097174	AGGAG	MHLLQHGTKNKKGYITANAVLLALFVMLIVQITMQNITAVTLQSRLFQATEQDRLDVKSGVYRELSKVVANPAYTSTPYTLTLGNNAKVTVSTVNVGTSTVEKKITSQKITSQKGTLQLVVNVFKTPDNRWIIYRWAWVP*

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