Scaffold Ga0116246_10063190

Overview

Basic Information

• Taxon OID: 3300010327
• Scaffold ID: Ga0116246_10063190
• Source Dataset Name: AD_CNMVca
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1706
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Canada
• Coordinates
  • Lat. (^o): 49.25
  • Long. (^o): -123.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116246_100631903	F022008	N/A	MNDVEMLREALNDLSKQLQTLSEDNRASFGRIYDRLTKIETQMSEREYQFNRYEKTIENHEMRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIITVVLKSLGE*
Ga0116246_100631905	F066897	AGAAGG	MNSKAFWLIIIAVILLSAIFLWYNHTSTQETLIKAQDTIEETKQALRESQEAFKKIDKIAQEIKDVSISAEKAGDEYVKEIRFVSDDEFLDKLNAYSTVMVERVKQLE*