Scaffold Ga0134064_10097724

Overview

Basic Information

• Taxon OID: 3300010325
• Scaffold ID: Ga0134064_10097724
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 963
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000472	Metagenome / Metatranscriptome	1100	Y
F006381	Metagenome / Metatranscriptome	374	Y
F008487	Metagenome / Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134064_100977241	F000472	AGG	MAKTDEPVTQLATRIPKDLHRRLKLHCVTHEIAVQDFVVEAIEEKLGRKARLKK
Ga0134064_100977242	F006381	GGAGG	MPQCGEIVVERLTGNRAMVIRVLSPEEVTCRFGDGRLEDRFTFELEPLLSLRDPRGGGRFVPLGSLVWLFFSGFVSRWLRQAAPASVTNRLRLVQPSDSSRSSLAV*
Ga0134064_100977243	F008487	AGGAGG	MTVSEVGREGVRLVSQLTGVAISVPVVAGFVLLGAVVLVGRSLLDVGRKLLETKPRAREPLKAA*