Scaffold Ga0134086_10042282

Overview

Basic Information

• Taxon OID: 3300010323
• Scaffold ID: Ga0134086_10042282
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1529
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015777	Metagenome	252	Y
F016789	Metagenome / Metatranscriptome	244	Y
F023645	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134086_100422821	F015777	N/A	MLVIISVASLSSGHLEILVQRPQHHANAARIYQSFEQVKATLLNFGIAEKALDEVLKLLPQLANGERLKLTPVDVPHHDLVAEGFKLGIG*
Ga0134086_100422822	F023645	N/A	MATQPNRINAESWRCYMTLAENLRTKYGLTSLKTGGSCLPLTAINEALEAAAQIADCSHAPEIANQIRALKWEAKIPSYASEIQTARDAA*
Ga0134086_100422824	F016789	GGAGG	MPDRNFNWQTLCEAAIIETNPDKLAICIGAAEQAIAQRESLVDTTELERHKLGDARSVLKTLS