Scaffold Ga0134109_10000950

Overview

Basic Information

• Taxon OID: 3300010320
• Scaffold ID: Ga0134109_10000950
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009677	Metagenome / Metatranscriptome	314	N
F077145	Metagenome / Metatranscriptome	117	N
F090170	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134109_100009501	F090170	N/A	MFLRWEILRGWMPAILFAAIAVAIELLYFNYMVSRGMMDEAFNIPIGAAKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGP
Ga0134109_100009502	F009677	N/A	VNLYTGNKLIISSTQQAIKSVIVRGNLTAATVSNGTYPAKNFTLTTNSTQLYTLNLWLSYPSTYTTAIIINDPSAGANSQYTSYYISAGDLNLTIFAAFQPAPNNGEGVPLSWSSFFGWFSQFGSAFPLWIKVLYTILGAQFAFVGYRWIKFEDEKRRVEGHLPLLDRGNRIYMWIDVVFRTLLAGFIISLALMLGETVIITVAQYLFFVTLNLLPLVHVFSLFSVAVLGLIIYLAREGLDKFLDLKPMMED*
Ga0134109_100009505	F077145	GGA	MAVDTQGKSGWTGKDVSEREINLLNQRVIQFTDIEDTFLDVWLQLENANMDELAAKIINAGLLFEHYLSQLPNDPTQRSPEEIAQLETYRSDAGSALDEGRAALASTMTTAGVGSNMTSSLTSTAIKTGTLTFWSYLAFQEYLAVAAGNILSVVGFGVAAVAELFLGFW