Scaffold Ga0136653_10013137

Overview

Basic Information

• Taxon OID: 3300010319
• Scaffold ID: Ga0136653_10013137
• Source Dataset Name: Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4401
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -2.0288
  • Long. (^o): 29.1756
  • Depth (m): 220

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028692	Metagenome / Metatranscriptome	190	Y
F032173	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136653_100131375	F028692	GAGG	LAKHAGVSMMFAFIIVFAIATYAVSQLMSLAPRALQGVASGQDLLIGFGYVVVTVVSVLVLGRMIYSNERTAGRVKRRVRIFE*
Ga0136653_100131376	F032173	GAG	VSSLWLVLLALFLVVEVAFLLGAYASGLAGLERIFGIFTGLILVTFGVILYAGRLIFYD*