Scaffold Ga0136656_1076011

Overview

Basic Information

• Taxon OID: 3300010318
• Scaffold ID: Ga0136656_1076011
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.5161
  • Long. (^o): -76.1223

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042288	Metagenome / Metatranscriptome	158	Y
F088643	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136656_10760111	F088643	GAG	MKKEEKQAIIDILTKWRDMIGVDGRSVDVLIDKVNQIYIPEPIDIQEVDVIKEDIVNMCNQIKYDVKQNKVRGIDNTTKRMAIYKASEIKYGRTSSMECAVKEFFDKDRTTLLYWRNKSDDLIDVKDPMFVRYVNELI*
Ga0136656_10760112	F042288	N/A	MKGKVKVIVRVAVEHPDAETFNCLGNKIVLKAESYDHAYEFAMTILNLRDTKMFEYGDLMFFNKGILIEIDR*