NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136655_1226240

Scaffold Ga0136655_1226240


Overview

Basic Information
Taxon OID3300010316 Open in IMG/M
Scaffold IDGa0136655_1226240 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.0754Long. (o)-76.1533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038742Metagenome / Metatranscriptome165Y
F054437Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0136655_12262401F038742AGGAGMRINPNNFFGRELDILPPHFVNTVVKTHEANVEMMRRWIY
Ga0136655_12262402F054437AGGMRDIYKMDYFQNLMSVLIDNTRRLFRLHGKEYQLMPEAYTINAEMTKAGNWIDHIPGGFKTIVHTEPQQFVREAMEGVLPGYRQQDIKLIKHFRDTSKAQGLDAKIVDEHFDKEYRYED*

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