Scaffold Ga0136655_1152777

Overview

Basic Information

• Taxon OID: 3300010316
• Scaffold ID: Ga0136655_1152777
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 689
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.0754
  • Long. (^o): -76.1533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F056902	Metagenome / Metatranscriptome	137	N
F075450	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136655_11527771	F056902	AGGA	MDKYLKWIATGFLMIGAALNSLNIYPWGPIANLFGGMTWLI
Ga0136655_11527772	F007119	N/A	MAKYQVLKNKKVIKEFDNAMDTALFACNNEYGPNMDIYTDDKQASETWVHFEYKEKL*
Ga0136655_11527773	F075450	AGGAGG	MNNKLSNAIKTFCDATGFIHNAEIVHGSLFCKLNSMTDFSYTKNALKGFFKFYNGDNVTIKGYKLDGDNYSFDFI*