Scaffold Ga0136655_1001608

Overview

Basic Information

• Taxon OID: 3300010316
• Scaffold ID: Ga0136655_1001608
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10077
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.0754
  • Long. (^o): -76.1533

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052433	Metagenome	142	Y
F059124	Metagenome	134	Y
F072426	Metagenome	121	Y
F073751	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136655_100160811	F073751	AGG	MVQNNIKWNLTSEKCFEIIHLTLIDILSESKEGIRNINELIVMLNKRTKVYKLHNSRKYNSFSKYLKIEYNGFLNFIENYNFYGVIKNDKNISIKLYKNLVNLDDLKYTGKRLTKDSEWVFIDDELL*
Ga0136655_100160813	F052433	N/A	MDSSKYYPYNIPFYTDVKFIDVKFINNEDHLINIFFVKGDILGELAGIIFPHSERKYQFPENSIVAIISDKNPNKYHCFIKLIDGMTYIYP*
Ga0136655_10016088	F072426	N/A	MNTKPKLVDPNWFVKPKSIVKKIIPTNADNSLIINIIGLCILVIGGLCIYQRYLDREKTELETQNKIIELNEYVKRNIK*
Ga0136655_10016089	F059124	N/A	MNFDSNLVMAIIIYLGSCYALYNYKHSKMFDKSGNFKTFGLSKDETVFPYWLVTTLIGLSSYYFLIIRIDNLI*