Scaffold Ga0136654_1107832

Overview

Basic Information

• Taxon OID: 3300010315
• Scaffold ID: Ga0136654_1107832
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-70 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1460
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Strongylida → Trichostrongyloidea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.2833
  • Long. (^o): -157.8469
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000017	Metagenome	6504	Y
F006337	Metagenome	375	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136654_11078321	F000017	N/A	MEYEVDASIPSGRPKRSWREVVEKDCQTHKLNKEDAMDRSRWRKLSNDV*
Ga0136654_11078323	F006337	AGG	MEHEVEGSRPRGRPKKTWKEVVREDCQAHKLNKEDTMD