Scaffold Ga0136654_1023878

Overview

Basic Information

• Taxon OID: 3300010315
• Scaffold ID: Ga0136654_1023878
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-70 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2986
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.2833
  • Long. (^o): -157.8469
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000246	Metagenome	1464	Y
F006687	Metagenome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136654_10238781	F006687	N/A	RQEGHPACKKLEWWGAGVVICLERGADLHMAQLMPLPLTVSRFSKIQIGFTFLVPAHPGMVW*
Ga0136654_10238782	F000246	N/A	MVNVDLYSAIITKVSNALDTLESGEKPGFQTLSKGLVVLLCAEVVRQRVPDHGAMHSECSASDSGSPMSGDHHQLLCG*