Scaffold Ga0102883_1004212

Overview

Basic Information

• Taxon OID: 3300010312
• Scaffold ID: Ga0102883_1004212
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4704
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2322
  • Long. (^o): -123.8817

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102883_100421211	F072349	AGG	MEKVLCYSCNKSKNALSAKKSSLLAINILLCQGCTDNKLEPRWIVILAGRQYGADHVKEHIAKKKYIGLDITASELLI*
Ga0102883_100421212	F105192	N/A	MNISLYQILITLFAASISGLFTAYINSKRLKKEKIAQAADKAHDQLLIEIKDLQIKLYKLEKDLSEWKDKYFEALQELIKVKAELEGTMLKLTHVELHSNED*