Basic Information | |
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Taxon OID | 3300010311 Open in IMG/M |
Scaffold ID | Ga0116254_1055417 Open in IMG/M |
Source Dataset Name | AD_JPTRca |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1275 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Japan | |||||||
Coordinates | Lat. (o) | 34.65 | Long. (o) | 135.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021262 | Metagenome / Metatranscriptome | 219 | N |
F024321 | Metagenome / Metatranscriptome | 206 | N |
F049316 | Metagenome / Metatranscriptome | 147 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116254_10554171 | F049316 | AGGAGG | MNKDKRITTIVLDKEADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEFLDKLYWQYKIDNPHIFTAIQFGNLADAAVMIAEAVKQLPQEPE |
Ga0116254_10554172 | F021262 | AGGAG | MSKKYYVKLTTGREFTGTAKEIVTQLRNESRLLAITPRKYAKLVAKSYEMSTGLKLHTWTYNSFVKSLGKSLMVMEFKEVK* |
Ga0116254_10554173 | F024321 | GGAGG | MLEEILKLIAGMAGLGAFTSMLINLLKAVGLVKDGQADKAFKIADLIVFVIITVIYLTKTPVDWAQVDEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKLKE* |
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