NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134088_10704941

Scaffold Ga0134088_10704941


Overview

Basic Information
Taxon OID3300010304 Open in IMG/M
Scaffold IDGa0134088_10704941 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)507
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018246Metagenome / Metatranscriptome236Y
F051348Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0134088_107049411F018246GAGGMRHDFTSRKQVILGALTLLILADVAFAVYSWQLASAPRTPQQQFAAEIRRHDLLKADIKRAQDIRDSIPAIQKDCDKFDQSLFPAFSGYSSVTSELGGMAKRS
Ga0134088_107049412F051348N/AEQGRVEVKLTVGAASDEAKLKFLHALEESKEFTEVRVQHEGTPNQLAGSTGDQKVVQLTTVYSRI*

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