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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010304 Open in IMG/M |
| Scaffold ID | Ga0134088_10006946 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4767 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Angelo Coastal Reserve, California | |||||||
| Coordinates | Lat. (o) | 39.7181 | Long. (o) | -123.6527 | Alt. (m) | Depth (m) | .2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010585 | Metagenome / Metatranscriptome | 302 | Y |
| F019622 | Metagenome | 228 | Y |
| F055612 | Metagenome / Metatranscriptome | 138 | Y |
| F076919 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134088_100069461 | F055612 | AGGGGG | MYRLKLLLVGVSAALAASVGTAYASTIVRDALTERYKASGIEAPNQFDEGHVIKRGTVLLLQADGVPAGVLRTTQINTKSPRFHAHDYARVTVGEDGHIILAEPASLTLGKGTRLVVLNLKVDRDRVRMFTHTLDPVRVPDGKTAHGCTEFIFVFDPATLAGADVETVNARIDQWLSVASAG* |
| Ga0134088_100069462 | F076919 | AGGAGG | MMHMVDGACGPLMIVVMGLSWLLGLGLVASLIVLVWTAIGRLRRTPVRS* |
| Ga0134088_100069464 | F010585 | N/A | MFVVLGHVCALPVHVHAGVVTTHSEDHPEHGADEAAHGGSCEALRASSSFDAPVLIPTGFVLPVIGDLEAGLARATLSPAPLSSLPLFLLHAALLI* |
| Ga0134088_100069466 | F019622 | N/A | LPDLGIFVEIEGEPNAVAFEKGRYFTRGQVGLGKEAFFMLNLGGLLGALGAPTMEMGGQTMVGKHGGFSMHGPMLMAGKVDPSTNFSYATNRQLIAPTELEVEHGEVERLPVVPYAFTSKFFGLFKNRDAREPQLVTDQVMYNAPGAPGADFHAMINDVLLTQVGFLSENEGFNTYGALRLDLLDRRELTASVSAFFNWGFGVVRAPDPEDLEHPGGARLDRMRYGVAANVRWRELDVYGAVIWDRLHGLPGELGRAFDRTAAGLTFEVDYLAHEKVLLSGRFDQLWAGGLKEQKQDGSVLSLQVKFYPWQNVAFFVRDSVNLRGFVEESPLRNWRNQFFIGIDWDF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |