Scaffold Ga0134088

Basic Information
Taxon OID	3300010304 Open in IMG/M
Scaffold ID	Ga0134088_10001038 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010304 Open in IMG/M

Scaffold ID

Ga0134088_10001038 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10447
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10447

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)	Depth (m)	.2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Angelo Coastal Reserve, California

Coordinates

Lat. (^o)

39.7181

Long. (^o)

-123.6527

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008301	Metagenome / Metatranscriptome	335	Y
F020335	Metagenome	224	Y
F031422	Metagenome	182	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134088_1000103811	F031422	N/A	LALLASSLRPTAWWRPIATWLGLASLTELFFSLLLLVHAGQAGLLAAYGANPPTSGTILYPARVIGTDLSTYQSPSLTASFNLDFYLGLLSLTIVGTGTILKMLQERGILAASAIPGVKEFFLIPPYRHAWISTGDRDLNPLSQDPENTTDDQLLDSFGKIYRTVQPGGIISIILPSWASTLGDRFQKLLTWTGFSVEDTETIYRAPGKPETQLRFKKPLSPSGSDVQDPEKTPVLEQAIESESSFPDIPPQLTVSTQPDWGLTKMTKEERAMLRSALSILSKSREPMPYHELLNQVYMELVERKVQFDSARKIESTLLKHSGQELSLTEETDEQGLKSVKRWSLGTDDLSPDHEGKVSIFRKLSSHRPRVPPVMRLLKKWQRKPKYRPRASREEE*
Ga0134088_100010385	F008301	N/A	MGKMMISLSDQAEDLVRHEVEKVYHGRVGGLSIFFEQILRNYFQGNGNGKPSKIVRMKNGKS*
Ga0134088_100010386	F020335	AGG	MLESLRLRLHSSLATLDVLIDNCWPLILGGLIALTTFQKLSLILHTDGGGDLLGADIPKSMMLIAGQNPYTSNPWASPYPPFLLAVVGGIIRLTSSNAILAPDTIGVISRNVRMTGLCADATVALLVFLTLRAKRVSGLSGIVPPALFLTLPSISLSPYYWFNSDVLGYPILAASVLALVLGRYFLGSVLLATATVFKIHPILAIPLVLVWLAKRQGIAKSLPTIMTTGSILSFGLVAPAVLPGYLESVLGFNLSSGFGGGTSSFTMMNLLYAIFPLVFHLSLPTSLENQVWLAATVTLFVAALSIVWSRARVLNPVDAVAIGLLVWLIPLRQIYTHYLVWAIVPFLMRGRLRQTLMVGSLLEIANTMSSWSWDLPPDPFPVLATAYGFFVTSLAYLSVSVTALVFVLREIGVRRQPDTQEADGSVILERYPIPTIRST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134088_10001038

Overview

Ecosystem & Geography

Associated Families

Sequences