Scaffold Ga0134088_10000520

Overview

Basic Information

• Taxon OID: 3300010304
• Scaffold ID: Ga0134088_10000520
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13438
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005875	Metagenome / Metatranscriptome	387	Y
F047605	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134088_100005201	F005875	N/A	MIIGLIGGSLFLLAGFLSLLPWAVSGSIAGVLLGSWFGGEIKKRLDRVNEEGKETRVIRFRKRALLEDNVSKMRTAGWEPRWESYRETQTGLLVRRIIYSVVMERKQRKLERRALKQLSKFLFLFPGNVTSS*
Ga0134088_1000052012	F047605	GAGG	MVEACDCTIVIDNGVNRDYLSTSKRTTDETASIAVRSLTELLSGAEDVEARDILQVLSRGDLATVCSFSLRTGDTLQASVIEALRTPSANLPLNKAKGALLLYRGPATLSTAQFAQAYDTLVSIVGSNLSFVHGSVYSPSEPSVCLFLTGYAYGTALNGFIDFIELYDAEYGQEDGEDFTTLSVPLYQMEQVQARRD*