Scaffold Ga0116202_10006896

Overview

Basic Information

• Taxon OID: 3300010302
• Scaffold ID: Ga0116202_10006896
• Source Dataset Name: Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6694
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -2.0288
  • Long. (^o): 29.1756
  • Depth (m): 325

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028692	Metagenome / Metatranscriptome	190	Y
F032173	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116202_100068968	F032173	GAG	VSSLWLVLLVLFLVVEVAFLLGAYASGLAGLERIFGIFTGLILVTFGVILYAGRLIFYD*
Ga0116202_100068969	F028692	AGG	MMFAFIIVFVIATYAVSQLMSLAPRALQGVASGLDLLIGFGYVVVTVVSVLVLGRMIYSNERTAGRVKRRVRIFE*