Scaffold Ga0129351_1209837

Overview

Basic Information

• Taxon OID: 3300010300
• Scaffold ID: Ga0129351_1209837
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 754
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032867	Metagenome / Metatranscriptome	179	Y
F054777	Metagenome / Metatranscriptome	139	N
F059345	Metagenome	134	Y
F066266	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129351_12098371	F032867	AGGAG	MDDIEKMIDNLVDNHYRRQHLIGTEADESEYLADISEEDDE*
Ga0129351_12098372	F066266	AGGAG	MSILNEHELEKKIVYTIKEKIQEALAYRTYDSKTNKRCLQDYRKTIRDAKDFDELKRIMSEFVDDLMHI*
Ga0129351_12098373	F059345	AGGAG	MSMNYTKLESIHCALQELQQEFNIPNDHEHLENAFKFTEDLREEHLKEII*
Ga0129351_12098374	F054777	N/A	DIMSNKINDETLERLYEDAIADDERGLLEDKIRNMVLRYGLHQDDDRDEILQLIAEDEFYEQFT*