Scaffold Ga0129351_1083605

Overview

Basic Information

• Taxon OID: 3300010300
• Scaffold ID: Ga0129351_1083605
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129351_10836051	F003677	N/A	VGLSPYRKVFMIDESLCLFHNDVDKKVYEIEYEVTYVTKWQVIGEDQNEAMNKWLEEHKLDLSTEDGKDCVCSYAKDYTQIGKVNKIATIK
Ga0129351_10836052	F003834	AGGAG	MSSTKTPIRQAEMDHIDHFLETKYDDRKNTLKTEMQDIIDREAEENFEAFKNKLNVNKLHKEVYAFYKDHEKFANEMDTILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKQPDELDRLLKKLCHEETTRDFYKGPRGKSLQMLDMSKEYCKNLLNAGQSLATVWKTIDIEMSKEKINTSTIPKPEFLAITK*
Ga0129351_10836053	F050676	AGGAGG	MQTKLPVKSRVADKYKPMLTYYAELIGLCHETVAETQSLKFLDPMGKKTTATSLFIRVCQRMDKSIDAKEIANKLENVSQINKQKEIA*