Scaffold Ga0129351_1024665

Overview

Basic Information

• Taxon OID: 3300010300
• Scaffold ID: Ga0129351_1024665
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2490
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034927	Metagenome	173	Y
F040577	Metagenome / Metatranscriptome	161	Y
F048887	Metagenome	147	Y
F068602	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129351_102466510	F048887	N/A	MHIRREIDNLLDKMNEIIAKEKESNKPDPELNKIFDEIRRKTDNGKRARGMWTESPEFMSIK*
Ga0129351_102466511	F068602	GAG	MEDDDPHASEMLEKSQYIVDTLAKDIHLYSDQQIEEILLMQQSMEFFLKEDNTDKAIIECRNLYNYISEITQ*
Ga0129351_102466512	F040577	N/A	SSNKMTELQKISSEIVEIFQNKINKLTNEQAENLNIHNNSMNFYMQLGDEEKALWEARKTLEYLEQITK*
Ga0129351_10246652	F034927	N/A	MKLDIFKLPDQWTDAEIEHLFDTNWNITLEQLSLLTNRTIQQLKTLLLPD*