Scaffold Ga0129351_1024510

Overview

Basic Information

• Taxon OID: 3300010300
• Scaffold ID: Ga0129351_1024510
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2499
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F062158	Metagenome	131	N
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129351_10245101	F062158	N/A	PDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLSITK*
Ga0129351_10245102	F003677	AGG	MVDEALYFFEKDVGKKVYEMEYEITYATKWQILAEDKDQAFKIWLENHKVDIATEDGKDVVCSYVKDYTQIGNTKEIAKIKLDIDNDEVIADES*
Ga0129351_10245104	F085570	N/A	MDKLMHIDSYKIWSYDYDYKNGKKSKTTSIKQHLISEECIDSRGLINLLSDLDNAWHNGYGKNIKIEVTFEPHEGE*