Scaffold Ga0129342_1247893

Overview

Basic Information

• Taxon OID: 3300010299
• Scaffold ID: Ga0129342_1247893
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 621
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.5161
  • Long. (^o): -76.1223

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084716	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129342_12478932	F084716	GGAGG	MTVVNFKTAPGKYWSRDMKYKVPKIGTKTDKGKWLNAYIQKFFVSGNHDYKFSAAKNYIKLKTTHFKINNKKVALVGFFKNLKKLKQYHFEGEVFNSQLIYQQQKEAA*