Scaffold Ga0126325_10016809

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126325_10016809

Scaffold Ga0126325_10016809

Overview

Basic Information
Taxon OID	3300010298 Open in IMG/M
Scaffold ID	Ga0126325_10016809 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-14 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3367
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Hawaii, USA
Coordinates	Lat. (^o)	21.2608	Long. (^o)	-157.7866	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001768	Metagenome	637	Y
F094885	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126325_100168095	F001768	N/A	MCAVNIRGHEANFCEADARCHEAEMEAEARKSEAEAKAE*
Ga0126325_100168099	F094885	GGAGG	MVLGKTGRSSDGEQWVQETAGASEVWEAVISRSRM*

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