Scaffold Ga0129345_1011467

Overview

Basic Information

• Taxon OID: 3300010297
• Scaffold ID: Ga0129345_1011467
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3453
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1849
  • Long. (^o): -76.1104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F025038	Metagenome / Metatranscriptome	203	N
F048992	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129345_101146710	F021778	GGAGG	MALPKFLEDYTTVGELISKMNNEYPECRLVAEMVDNGEDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEATPQKSIEKELDKAGIEYEDVSVSKTHVINNIKSFAMDVSSENKTNAANWYAQALGELGINETQLDINNMQTVKNKIQDIATELQVGGA*
Ga0129345_10114675	F048992	AGGGGG	MEYAADDINYGYMSILMQINSEYTLIDKIQNIREIDGSIEHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDIYVVNESGNTTMIDEDLDQLISLLHILYINKKAEEDELLNRALNPHTYRKVAKKMFYNEDPPF*
Ga0129345_10114676	F025038	N/A	MPEVNKNNRRFFVEDEYDLYDVRKARPFWNDVCEVNGWQIIKDEEDFKEDYVCKINNELYFMELQVVAYWHNFDLSKISNVRISASKINLLREKDNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLKTINPREVNVLDTNYCDCLENHLPIMKRSGGRMAFGQKDYNIRGANGICC*
Ga0129345_10114678	F023859	AGGA	MKKVIVKFIGVKKYLVTDNADPQKIKDMFRKDLELLPPVWANNIEAVMYAKDVPEEEEE*
Ga0129345_10114679	F020913	AGGTGG	MLGLFGRNKPLSILEDIQLQKEPSEFRKIQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEVCNCDNKQYAKLKKNGSPFMHKAYIKDWAL*